Your question is pretty detailed and requires lots of explanations and stuff that I personally don't have time to look up. I think you just need some good PowerPoint links. 
www.rdpslides.com
www.powerpointanswers.com
www.echosvoice.com/autoruncd.htm
Tushar Mehta (Excel MVP) has what I understand is a great timer for PPT: www.tushar-mehta.com/powerpoint/index.htm
Make sure the PCs that will be running the pres have the codecs required:
http://support.microsoft.com/default.aspx?scid=kb;en-us;291910&Product=ppt2002
And see this:
http://support.microsoft.com/default.aspx?scid=kb;en-us;322319&Product=ppt2002
(Particularly, I quote "If you include multimedia with your presentation, PowerPoint does not support cross-platform or multiple-computer compatibility. Microsoft does not recommend that you use PowerPoint Viewer to view your presentation on a system that does not have PowerPoint installed." What kinda crappy stuff is that, I ask you? Seems Billy-Boy wants you to buy Producer these days...
www.rdpslides.com
www.powerpointanswers.com
www.echosvoice.com/autoruncd.htm
Tushar Mehta (Excel MVP) has what I understand is a great timer for PPT: www.tushar-mehta.com/powerpoint/index.htm
Make sure the PCs that will be running the pres have the codecs required:
http://support.microsoft.com/default.aspx?scid=kb;en-us;291910&Product=ppt2002
And see this:
http://support.microsoft.com/default.aspx?scid=kb;en-us;322319&Product=ppt2002
(Particularly, I quote "If you include multimedia with your presentation, PowerPoint does not support cross-platform or multiple-computer compatibility. Microsoft does not recommend that you use PowerPoint Viewer to view your presentation on a system that does not have PowerPoint installed." What kinda crappy stuff is that, I ask you? Seems Billy-Boy wants you to buy Producer these days...