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So I was lucky enough to inherit a server enviroment a few months ago, Server 2003. It is a trusted enviroment with other domains, one of which hosts all security groups, logon servers, main AD . One of our two dc's failed. (not coming back) Of course it was the main one which hosted the trusts, and 4 of the 5 schema roles. I was able to seize the schema roles, verified WINS ad DNS on my working dc, and two days later the trust was re-established. Basically I am running a legacy domain, all the users and security groups have been migrated to the new domain (Domain B), and these servers sit on the legacy domain (Domain A). After the outage, a lot (20%) of the security permissions applied in Domain A, but reside in Domain B have reverted back to pre-migrated (Domain A) security groups.

I apologize for my wording, I don't know the best way to explain my problem.
 
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